2018

  1. Ł. Marcinkowski, A. Kloskowski, D. Warmińska. Solvation of ionic liquids based on N-methyl-N-alkylmorpholinium cations in N,N-dimethylformamide and N,N-dimethylacetamide –- Volumetric and compressibility studies. J. Chem. Thermodyn. 2018, 119, 92–101. [URL]

  2. P. Bruździak, A. Panuszko, E. Kaczkowska, B. Piotrowski, A. Daghir, S. Demkowicz, J. Stangret. Taurine as a water structure breaker and protein stabilizer. Amino Acids 2018, 50, 125–140. [URL]

  3. B. Żołnowska, J. Sławiński, K. Szafrański, A. Angeli, C. T. Supuran, A. Kawiak, M. Wieczór, J. Zielińska, T. Bączek, S. Bartoszewska. Novel 2-(2-arylmethylthio-4-chloro-5-methylbenzenesulfonyl)-1-(1,3,5-triazin-2-ylamino)guanidine derivatives: Inhibition of human carbonic anhydrase cytosolic isozymes I and II and the transmembrane tumor-associated isozymes IX and XII, anticancer activity, and molecular modeling studies. Eur. J. Med. Chem. 2018, 143, 1931–1941. [URL]

  4. M. Śmiechowski. Unusual Influence of Fluorinated Anions on the Stretching Vibrations of Liquid Water. J. Phys. Chem. B 2018, 122, 3141–3152. [URL]

  5. B. Adamczak, M. Kogut, J. Czub. Effect of osmolytes on the thermal stability of proteins: replica exchange simulations of Trp-cage in urea and betaine solutions. Phys. Chem. Chem. Phys. 2018, 20, 11174–11182. [URL]

  6. K. A. Biernacki, E. Kaczkowska, P. Bruździak. Aqueous solutions of NMA, Na2HPO4, and NaH2PO4 as models for interaction studies in phosphate–protein systems. J. Mol. Liquids 2018, 265, 361–371. [URL]

2017

  1. P. Wityk, M. Wieczór, S. Makurat, L. Chomicz-Mańka, J. Czub, J. Rak. Dominant Pathways of Adenosyl Radical-Induced DNA Damage Revealed by QM/MM Metadynamics. J. Chem. Theory Comput. 2017, 13, 6415–6423. [URL]

  2. M. Śmiechowski. Visualizing spatially decomposed intermolecular correlations in the infrared spectra of aprotic liquids. J. Mol. Graph. 2017, 78, 148–157. [URL]

  3. J. Pilipczuk, B. Zalewska-Piątek, P. Bruździak, J. Czub, M. Wieczór, M. Olszewski, M. Wanarska, B. Nowicki, D. Augustin-Nowacka, R. Piątek. Role of the disulfide bond in stabilizing and folding of the fimbrial protein DraE from uropathogenic Escherichia coli. J. Biol. Chem. 2017, 292, 16136–16149. [URL]

  4. K. Yavir, Ł. Marcinkowski, A. Kloskowski, J. Namieśnik. Evaluation of Gas Chromatography Stationary Phases Based on Morpholinium Ionic Liquids by McReynolds Constants and Activity Coefficients at Infinite Dilution. J. AOAC Int. 2017, 100, 1–11. [URL]

  5. W. Grudzinski, L. Nierzwicki, R. Welc, E. Reszczynska, R. Luchowski, J. Czub, W. I. Gruszecki. Localization and Orientation of Xanthophylls in a Lipid Bilayer. Sci. Rep. 2017, 7, 9619. [URL]

  6. M. Wieczór, J. Czub. How proteins bind to DNA: target discrimination and dynamic sequence search by the telomeric protein TRF1. Nucleic Acids Res. 2017, 45, 7643–7654. [URL]

  7. M. Śmiechowski, J. Krakowiak, P. Bruździak, J. Stangret. Unique Agreement of Experimental and Computational Infrared Spectroscopy: a Case Study of Lithium Bromide Solvation in an Important Electrochemical Solvent. Phys. Chem. Chem. Phys. 2017, 19, 9270–9280. [URL]

  8. J. Czub, M. Wieczór, B. Prokopowicz, H. Grubmüller. Mechanochemical Energy Transduction during the Main Rotary Step in the Synthesis Cycle of F1-ATPase. J. Am. Chem. Soc. 2017, 139, 4025–4034. [URL]

  9. J. Krakowiak, M. Śmiechowski. Excess molar volume and viscosity deviation for binary mixtures of γ-butyrolactone with dimethyl sulfoxide. J. Chem. Thermodyn. 2017, 110, 57–64. [URL]

  10. Ł. Marcinkowski, E. Szepiński, A. Kloskowski, J. Namieśnik, D. Warmińska. Solvation of ionic liquids based on N-alkyl-N-methylmorpholinium cations in N,N-dimethylformamide and dimethyl sulfoxide – A volumetric and acoustic study. J. Chem. Thermodyn. 2017, 104, 91–102. [URL]

  11. J. Grabowska, A. Kuffel, J. Zielkiewicz. The accretion of the new ice layer on the surface of hexagonal ice crystal and the influence of the local electric field on this process. J. Chem. Phys. 2017, 147, 174502. [URL]

  12. A. Kuffel. How water mediates the long-range interactions between remote protein molecules. Phys. Chem. Chem. Phys. 2017, 19, 5441–5448. [URL]

2016

  1. J. Gębicki, A. Kloskowski, W. Chrzanowski, P. Stepnowski, J. Namieśnik. Application of Ionic Liquids in Amperometric Gas Sensors. Crit. Rev. Anal. Chem. 2016, 46, 122–138. [URL]

  2. M. Śmiechowski. Anion–water interactions of weakly hydrated anions: molecular dynamics simulations of aqueous NaBF4 and NaPF6. Mol. Phys. 2016, 114, 1831–1846. [URL]

  3. M. Bratychak, O. Ivashkiv, P. Bruzdziak, J. Namiesnik, O. Shyshchak. Cross-linked epoxy-isocyanate blends containing Epidian-6 modified by glycols. Polimery 2016, 61, 316–321. [URL]

  4. M. Kogut, C. Kleist, J. Czub. Molecular dynamics simulations reveal the balance of forces governing the formation of a guanine tetrad–a common structural unit of G-quadruplex DNA. Nucleic Acids Res. 2016, 44, 3020–3030. [URL]

  5. A. Neumann, M. Wieczor, J. Zielinska, M. Baginski, J. Czub. Membrane Sterols Modulate the Binding Mode of Amphotericin B without Affecting Its Affinity for a Lipid Bilayer. Langmuir 2016, 32, 3452–3461. [URL]

  6. P. Bruździak, A. Panuszko, M. Jourdan, J. Stangret. Protein thermal stabilization in aqueous solutions of osmolytes. Acta Biochim. Pol. 2016, 63, 65–70. [URL]

  7. T. Laskowski, J. Czub, P. Sowiński, J. Mazerski. Intercalation complex of imidazoacridinone C-1311, a potential anticancer drug, with DNA helix d(CGATCG)2: stereostructural studies by 2D NMR spectroscopy. J. Biomol. Struct. Dyn. 2016, 34, 653–663. [URL]

  8. W. Delewski, B. Paterkiewicz, M. Manicki, B. Schilke, B. Tomiczek, S. J. Ciesielski, L. Nierzwicki, J. Czub, R. Dutkiewicz, E. A. Craig, J. Marszalek. Iron–Sulfur Cluster Biogenesis Chaperones: Evidence for Emergence of Mutational Robustness of a Highly Specific Protein–Protein Interaction. Mol. Biol. Evol. 2016, 33, 643–656. [URL]

  9. M. Śmiechowski, C. Schran, H. Forbert, D. Marx. Correlated Particle Motion and THz Spectral Response of Supercritical Water. Phys. Rev. Lett. 2016, 116, 027801. [URL]

  10. J. Zielińska, M. Wieczór, T. Bączek, M. Gruszecki, J. Czub. Thermodynamics and kinetics of amphotericin B self-association in aqueous solution characterized in molecular detail. Sci. Rep. 2016, 6, 19109. [URL]

  11. B. Adamczak, M. Wieczór, M. Kogut, J. Stangret, J. Czub. Molecular basis of the osmolyte effect on protein stability: a lesson from the mechanical unfolding of lysozyme. Biochem. J. 2016, 473, 3705–3724. [URL]

  12. A. Panuszko, P. Bruździak, E. Kaczkowska, J. Stangret. General Mechanism of Osmolytes’ Influence on Protein Stability Irrespective of the Type of Osmolyte Cosolvent. J. Phys. Chem. B 2016, 120, 11159–11169. [URL]

  13. M. Bratychak, O. Iatsyshyn, P. Bruzdziak, J. Namiesnik, O. Shyshchak. Synthesis and properties of carboxy derivative of Epidian 6 monomethacrylate. Polimery 2016, 61, 766–772. [URL]

  14. K. Szwarc, M. Płosiński, K. Czerniejewska, T. Laskowski, A. Leniak, J. Czub, P. Kubica, P. Sowiński, J. Pawlak, E. Borowski. Intramolecular transformation of an antifungal antibiotic nystatin A1 into its isomer, iso-nystatin A1 – structural and molecular modeling studies. Magn. Reson. Chem. 2016, 54, 953–961. [URL]

  15. A. Nowak-Zaleska, M. Wieczór, J. Czub, Ł. Nierzwicki, R. Kotłowski, A. Mikucka, E. Gospodarek. Correlation between the number of Pro–Ala repeats in the EmrA homologue of Acinetobacter baumannii and resistance to netilmicin, tobramycin, imipenem and ceftazidime. J. Glob. Antimicrob. Resist. 2016, 7, 145–149. [URL]

  16. J. Grabowska, A. Kuffel, J. Zielkiewicz. Structure of solvation water around the active and inactive regions of a type III antifreeze protein and its mutants of lowered activity. J. Chem. Phys. 2016, 145, 075101. [URL]

  17. A. Kuffel, J. Zielkiewicz. Water-mediated influence of a crowded environment on internal vibrations of a protein molecule. Phys. Chem. Chem. Phys. 2016, 18, 4881–4890. [URL]

2015

  1. M. Śmiechowski. Molecular hydrogen solvated in water – A computational study. J. Chem. Phys. 2015, 143, 244505. [URL]

  2. A. Panuszko, B. Adamczak, J. Czub, E. Gojło, J. Stangret. Hydration of amino acids: FTIR spectra and molecular dynamics studies. Amino Acids 2015, 47, 2265–2278. [URL]

  3. F. Pena-Pereira, Ł. Marcinkowski, A. Kloskowski, J. Namieśnik. Ionogel fibres of bis(trifluoromethanesulfonyl)imide anion-based ionic liquids for the headspace solid-phase microextraction of chlorinated organic pollutants. Analyst 2015, 140, 7417–7422. [URL]

  4. Ł. Marcinkowski, F. Pena-Pereira, A. Kloskowski, J. Namieśnik. Opportunities and shortcomings of ionic liquids in single-drop microextraction. Trac-Trends Anal. Chem. 2015, 72, 153–168. [URL]

  5. P. Bruździak, B. Adamczak, E. Kaczkowska, J. Czub, J. Stangret. Are stabilizing osmolytes preferentially excluded from the protein surface? FTIR and MD studies. Phys. Chem. Chem. Phys. 2015, 17, 23155–23164. [URL]

  6. F. Pena-Pereira, A. Kloskowski, J. Namieśnik. Perspectives on the replacement of harmful organic solvents in analytical methodologies: a framework toward the implementation of a generation of eco-friendly alternatives. Green Chem. 2015, 17, 3687–3705. [URL]

  7. Ł. Marcinkowski, A. Kloskowski, J. Czub, J. Namieśnik, D. Warmińska. Solvation of ionic liquids based on N-methyl-N-alkyl morpholinium cations in dimethylsulfoxide – volumetric and compressibility studies. J. Chem. Thermodyn. 2015, 88, 36–43. [URL]

  8. Ł. Nierzwicki, J. Czub. Specific Binding of Cholesterol to the Amyloid Precursor Protein: Structure of the Complex and Driving Forces Characterized in Molecular Detail. J. Phys. Chem. Lett. 2015, 6, 784–790. [URL]

  9. Ł. Marcinkowski, A. Kloskowski, A. Spietelun, J. Namieśnik. Evaluation of polycaprolactone as a new sorbent coating for determination of polar organic compounds in water samples using membrane-SPME. Anal. Bioanal. Chem. 2015, 407, 1205–1215. [URL]

  10. L. Nierzwicki, M. Wieczor, V. Censi, M. Baginski, L. Calucci, S. Samaritani, J. Czub, C. Forte. Interaction of cisplatin and two potential antitumoral platinum (II) complexes with a model lipid membrane: a combined NMR and MD study. Phys. Chem. Chem. Phys. 2015, 17, 1458–1468. [URL]

  11. A. Kuffel, D. Czapiewski, J. Zielkiewicz. Unusual dynamic properties of water near the ice-binding plane of hyperactive antifreeze protein. J. Chem. Phys. 2015, 143, 135102. [URL]

  12. A. Kuffel, J. Zielkiewicz. Water-mediated long-range interactions between the internal vibrations of remote proteins. Phys. Chem. Chem. Phys. 2015, 17, 6728–6733. [URL]

2014

  1. A. Kuffel, D. Czapiewski, J. Zielkiewicz. Unusual structural properties of water within the hydration shell of hyperactive antifreeze protein. J. Chem. Phys. 2014, 141, 055103. [URL]

  2. F. Pena-Pereira, Ł. Marcinkowski, A. Kloskowski, J. Namieśnik. Silica-Based Ionogels: Nanoconfined Ionic Liquid-Rich Fibers for Headspace Solid-Phase Microextraction Coupled with Gas Chromatography–Barrier Discharge Ionization Detection. Anal. Chem. 2014, 86, 11640–11648. [URL]

  3. J. Starzyk, M. Gruszecki, K. Tutaj, R. Luchowski, R. Szlazak, P. Wasko, W. Grudzinski, J. Czub, W. I. Gruszecki. Self-Association of Amphotericin B: Spontaneous Formation of Molecular Structures Responsible for the Toxic Side Effects of the Antibiotic. J. Phys. Chem. B 2014, 118, 13821–13832. [URL]

  4. J. Czub, H. Grubmüller. Rotation Triggers Nucleotide-Independent Conformational Transition of the Empty β Subunit of F1-ATPase. J. Am. Chem. Soc. 2014, 136, 6960–6968. [URL]

  5. Ł. Marcinkowski, T. Olszewska, A. Kloskowski, D. Warmińska. Apparent Molar Volumes and Expansivities of Ionic Liquids Based on N-Alkyl-N-methylmorpholinium Cations in Acetonitrile. J. Chem. Eng. Data 2014, 59, 718–725. [URL]

  6. Ł. Marcinkowski, A. Kloskowski, J. Namieśnik. Physical and Thermophysical Properties of 1-Hexyl-1,4-diaza[2.2.2]bicyclooctanium Bis(trifluoromethylsulfonyl)imide Ionic Liquid. J. Chem. Eng. Data 2014, 59, 585–591. [URL]

  7. M. Wieczór, P. Wityk, J. Czub, L. Chomicz, J. Rak. A first-principles study of electron attachment to the fully hydrated bromonucleobases. Chem. Phys. Lett. 2014, 595–596, 133–137. [URL]

  8. M. Wieczór, A. Tobiszewski, P. Wityk, B. Tomiczek, J. Czub. Molecular Recognition in Complexes of TRF Proteins with Telomeric DNA. PLoS ONE 2014, 9, e89460. [URL]

  9. Ł. Marcinkowski, A. Kloskowski, J. Namieśnik. Measurement of activity coefficients at infinite dilution of organic solutes in the ionic liquid 1-hexyl-1,4-diaza[2.2.2]bicyclooctanium bis(trifluoromethylsulfonyl)imide using gas–liquid chromatography. J. Chem. Thermodyn. 2014, 71, 84–90. [URL]

  10. J. Wawer, J. Krakowiak, M. Szociński, Z. Lustig, M. Olszewski, K. Szostak. Inhibition of amyloid fibril formation of hen egg white lysozyme by trimethylamine N-oxide at low pH. Int. J. Biol. Macromol. 2014, 70, 214–221. [URL]

  11. J. Krakowiak, J. Wawer. Hydration of urea and its derivatives – Volumetric and compressibility studies. J. Chem. Thermodyn. 2014, 79, 109–117. [URL]

2013

  1. A. Spietelun, A. Kloskowski, W. Chrzanowski, J. Namieśnik. Understanding Solid-Phase Microextraction: Key Factors Influencing the Extraction Process and Trends in Improving the Technique. Chem. Rev. 2013, 113, 1667–1685. [URL]

  2. D. Warmińska, H. Koziel, W. Grzybkowski. Volumetric properties of zinc(II) chloride in N,N-dimethylacetamide and dimethylsulfoxide. J. Mol. Liquids 2013, 177, 252–256. [URL]

  3. J. Gębicki, A. Kloskowski, W. Chrzanowski. Prototype of electrochemical sensor for measurements of volatile organic compounds in gases. Sens. Actuator B-Chem. 2013, 177, 1173–1179. [URL]

  4. A. Neumann, M. Bagiński, S. Winczewski, J. Czub. The effect of sterols on amphotericin B self-aggregation in a lipid bilayer as revealed by free energy simulations. Biophys. J. 2013, 104, 1485–1494. [URL]

  5. A. Spietelun, Ł. Marcinkowski, A. Kloskowski, J. Namieśnik. Determination of volatile organic compounds in water samples using membrane-solid phase microextraction (M-SPME) (headspace version). Analyst 2013, 138, 5099–5106. [URL]

  6. P. Bruździak, A. Panuszko, J. Stangret. Influence of Osmolytes on Protein and Water Structure: A Step To Understanding the Mechanism of Protein Stabilization. J. Phys. Chem. B 2013, 117, 11502–11508. [URL]

  7. A. Kuffel, J. Zielkiewicz. Properties of water in the region between a tubulin dimer and a single motor head of kinesin. Phys. Chem. Chem. Phys. 2013, 15, 4527–4537. [URL]

  8. J. Krakowiak, J. Wawer, A. Panuszko. The hydration of the protein stabilizing agents: Trimethylamine-N-oxide, glycine and its N-methylderivatives – The volumetric and compressibility studies. J. Chem. Thermodyn. 2013, 60, 179–190. [URL]

  9. J. Krakowiak, J. Wawer, A. Panuszko. Densimetric and ultrasonic characterization of urea and its derivatives in water. J. Chem. Thermodyn. 2013, 58, 211–220. [URL]

  10. D. Warmińska, A. Fuchs, D. Lundberg. Apparent molar volumes and compressibilities of lanthanum, gadolinium, lutetium and sodium trifluoromethanesulfonates in N,N-dimethylformamide and N,N-dimethylacetamide. J. Chem. Thermodyn. 2013, 58, 46–54. [URL]

  11. A. Fuchs, D. Lundberg, D. Warmińska, I. Persson. On the Structure and Volumetric Properties of Solvated Lanthanoid(III) Ions in Amide Solutions. J. Phys. Chem. B 2013, 117, 8502–8511. [URL]

  12. B. Zalewska-Piątek, S. Wilkanowicz, P. Bruździak, R. Piątek, J. Kur. Biochemical characteristic of biofilm of uropathogenic Escherichia coli Dr+ strains. Microbiol. Res. 2013, 168, 367–378. [URL]

2012

  1. A. Kuffel, J. Zielkiewicz. The importance of the shape of the protein-water interface of a kinesis motor domain for dynamics of the surface atoms of the protein. Phys. Chem. Chem. Phys. 2012, 14, 5561–5569. [URL]

  2. A. Kuffel, J. Zielkiewicz. Why the Solvation Water around Proteins is More Dense than Bulk Water. J.Phys. Chem. B 2012, 116, 12113–12124. [URL]

  3. A. Panuszko, M. Wojciechowski, P. Bruździak, P. W. Rakowska, J. Stangret. Characteristics of hydration water around hen egg lysozyme as the protein model in aqueous solution. FTIR spectroscopy and molecular dynamics simulation. Phys. Chem. Chem. Phys. 2012, 14, 15765–15773. [URL]

  4. P. Bruździak, P. W. Rakowska, J. Stangret. Chemometric Method of Spectra Analysis Leading to Isolation of Lysozyme and CtDNA Spectra Affected by Osmolytes. Appl. Spectrosc. 2012, 66, 1302–1310. [URL]

  5. H. Staroszczyk, J. Pielichowska, K. Sztuka, J. Stangret, I. Kołodziejska. Molecular and structural characteristics of cod gelatin films modified with EDC and TGase. Food Chem. 2012, 130, 335–345. [URL]

  6. D. Warmińska. Volumetric and acoustic properties of D-mannitol in aqueous sodium or magnesium(II) chloride solutions over temperature range of 293.15 to 313.15 K. Carbohydr. Res. 2012, 349, 44–51. [URL]

  7. D. Warmińska, J. Stangret. Application of the tetraphenylphosphonium tetraphenylborate (TPTB) assumption to the thermodynamic properties of solvated ions in dimethylsulfoxide. Phys. Chem. Chem. Phys. 2012, 14, 3176–3180. [URL]

  8. J. Gębicki, A. Kloskowski, I. Kwiatkowska, W. Chrzanowski. Elektrochemiczny czujnik na bazie cieczy jonowej do oznaczania par benzaldehydu. Elektronika - konstrukcje, technologie, zastosowania 2012, 53, 19–20. [URL]

  9. J. Krakowiak, J. Wawer, A. Farmas. Apparent molar volumes and compressibilities of electrolytes and ions in gamma-butyrolactone. J. Chem. Thermodyn. 2012, 54, 412–420. [URL]

  10. A. Dołęga, W. Marynowski, K. Baranowska, M. Śmiechowski, J. Stangret. Intramolecular interactions in crystals of tris(2,6-diisopropylphenoxy)silanethiol and its sodium salts. Inorg. Chem. 2012, 51, 836–843. [URL]

  11. J. Krakowiak. Densimetric and ultrasonic characterization of pentaerythritol in water and in aqueous NaCl and MgCl2 solutions at different temperatures. J. Chem. Thermodyn. 2012, 54, 444–452. [URL]

  12. J. Krakowiak, D. Lundberg, I. Persson. A coordination chemistry study of hydrated and solvated cationic vanadium ions in oxidation states +III, +IV, and +V in solution and solid state. Inorg. Chem. 2012, 51, 9598–9609. [URL]

  13. D. Warmińska, J. Wawer. Apparent molar volumes and compressibilities of lanthanum, gadolinium and lutetium trifluoromethanesulfonates in dimethylsulfoxide. J. Chem. Thermodyn. 2012, 55, 79–84. [URL]